CRAN Package Check Results for Package rPDBapi

Last updated on 2024-05-13 15:57:27 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 8.25 55.99 64.24 ERROR
r-devel-linux-x86_64-debian-gcc 1.1 5.39 41.22 46.61 ERROR
r-devel-linux-x86_64-fedora-clang 1.1 83.10 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1 130.06 OK
r-devel-windows-x86_64 1.1 7.00 66.00 73.00 ERROR
r-patched-linux-x86_64 1.1 6.67 59.23 65.90 OK
r-release-linux-x86_64 1.1 4.82 51.76 56.58 ERROR
r-release-macos-arm64 1.1 37.00 OK
r-release-macos-x86_64 1.1 72.00 OK
r-release-windows-x86_64 1.1 9.00 67.00 76.00 ERROR
r-oldrel-macos-arm64 1.1 37.00 OK
r-oldrel-macos-x86_64 1.1 76.00 OK
r-oldrel-windows-x86_64 1.1 9.00 81.00 90.00 ERROR

Additional issues

M1mac

Check Details

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-10T18:55:36.569+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-13T00:41:54.772+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-12T20:48:51.468+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1
Check: examples
Result: ERROR Running examples in 'rPDBapi-Ex.R' failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-10T11:00:57.215+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-windows-x86_64

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-12T14:09:48.189+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-release-linux-x86_64

Version: 1.1
Check: examples
Result: ERROR Running examples in 'rPDBapi-Ex.R' failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-11T14:09:30.237+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-release-windows-x86_64

Version: 1.1
Check: examples
Result: ERROR Running examples in 'rPDBapi-Ex.R' failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-10T13:56:52.437+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-oldrel-windows-x86_64